When and How Should I Change My Electron Multiplier Horn in My Mass Spectrometer?

Video Notes

This video only applies to the 5977 single quadrupole MSD.

Theory

An electron multiplier is a device used to multiply the signal of electrons on the mass spectrometer. The signal is sent to a digitizer, which produces the abundance seen on the computer. When an ion reaches the end of the ion beam, it is strongly attracted to a high-energy dynode (HED) which carries a strong opposite charge to the charge of the ion. For example, if the ion is positive the dynode is charged in negative. When the ion strikes the dynode, electrons are released and are attracted to the electron multiplier horn. A single electron striking the horn will release additional electrons, the number of which are dependent on the gain charge. Because of the cone shape of the horn, the released electrons bounce to the opposite side of the horn and release even more electrons. The voltage differential from the entrance to the end of the horn, funnel the electrons to the digitizer. The digitizer translates the signal into a format that can be understood by your computer, which then generates peaks on the screen.

As the electron multiplier is used, the ability of the horn to multiply the signal is degraded. This requires a higher charge to be placed on the horn to maintain the same results. That charge is read in the tune report as “EM volts.” The tune determines what the EM volts setting should be.

When to Change the Electron Multiplier Horn

Use the stoplight system to determine when to change your horn. The following values are EM volts read on your tune report.

Red = >2000

Yellow = 1800-2000

Green = <1800

Electron multiplier horn (5977B/C: part number G7002-80103, 5977A: part number G3170-80103)

DE5207710

  •   In a perfect world no air should be allowed into the inlet, column, or mass spectrometer while they are hot, greater than 100°C.  However many operators do not want to take the time to cool all parts down to less than 100°C or vent the MS every time they do routine injection port maintenance.  Some have to do inlet maintenance every day.

    It depends what needs to be done with the inlet.  If just changing the septum, or the septum and liner, cool off the inlet and oven to <100°C, set inlet pressure to 0 psi, wait for it to equilibrate, and change those parts.  After they have been replaced set the inlet pressure back to normal, wait at least five or ten minutes for the carrier gas to sweep any air out of the inlet and column, and then heat the inlet/oven back to normal and it's ready to run.  Try to work quickly. Do not overtighten the septum.

    If replacing the gold seal, cleaning the weldment, and/or cutting the column, one way to minimize oxygen is to cool off the inlet and oven, cut the column, and then carefully press the cut end into the side of a septum to cap it off.  Then do the maintenance. The column will be under vacuum so you can take your time doing the maintenance. When complete, cut the column again to avoid any septum particles that may be in that bit of column, install the new ferrule, and install the column into the inlet.  Same as above, wait five or ten minutes before heating up the inlet and oven.  Some air gets into the MS, but as long as you are prepared and quite quick, not much.

    The column is a restrictor. If the end of a typical 30m × 0.25mmid column is open to atmosphere the MS can only pull about 0.5 ml/min of air in. 

    Always cool off and vent the MS if you need to replace the column. Always.

    Everything that goes into the column goes into the mass spectrometer and goes everywhere inside.  At GC/MS vacuum levels molecules and ions are bouncing around everywhere at very high speed - hundreds to thousands of miles per hour.  Any air that comes out of the column touches the ion source first due to proximity, but those same molecules bounce around and touch every surface inside the analyzer until they bounce into the high vacuum pump to be pumped away by the rough pump.  

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  • Hello,

    It is always best to vent the MS unless you have a purged union (backflush) in line which can supplement flow. Letting even small amounts of oxygen into your MS while the source and quads are hot can cause damage.   

  • Thank you for this great video 

    I wonder if I could damage the multiplier horn when I do inlet maintenance without venting the MS.

    I put the pressure off and temperature under at least 50C when doing so.

    I have heard that the oxygen will not be guide in the quad and will be directed at the foreline pump exhaust 

    Is it okay ? 

    thank 

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