Here is a "best of" collection of links to manuals and tools for Microarray workflow. For other instruments refer to Collection of Support Documents
Collection of Microarray Resources
For SureScan Dx Microarray Scanner resources, please see here
SureScan Microarray Scanner
General
G4900DA SureScan Microarray Scanner System User Guide
2100 Bioanalyzer Maintenance and Troubleshooting Guide
2100 Bioanalyzer Support Tool Box - Download here
2100 Bioanalyzer Site Preparation Checklist
2100 Bioanalyzer Software B.02.10 - Download link
2100 Bioanalyzer ReadMe file - Software Installation and PC System Requirements
2100 Bioanalyzer and PC connection instructions
2100 Bioanalyzer Compliance Solution
2100 Bioanalyzer and TapeStation Systems Consumables
Kit Guides
DNA 7500 and DNA 12000 kit guide
High Sensitivity DNA kit guide
High Sensitivity Protein 250 kit guide
Technical and Application Notes
DNA
2100 Bioanalyzer DNA Kits Overview
Comparison of Bioanalyzer and UV based Quantitation of QPCR Standards
2100 Bioanalyzer for Basmati Rice Authenticity Testing
Sample QC using Bioanalyzer and TapeStation for NGS Solutions
FFPE sample QC using Bioanalyzer
NGS library prep QC using 4150 TapeStation and 2100 Bioanalyzer
Comparison of DNA Assays Using the 4200 TapeStation System and 2100 Bioanalyzer System
RNA
2100 Bioanalyzer RNA Kits Overview
Quantitation Comparison of total RNA using Bioanalyzer, RiboGreen and UV
Quality Control of Guide RNA for CRISPR
DV200 Determination Tool and DV200 Technical Overview
Protein
2100 Bioanalyzer Protein Kits Overview
Protein Assays Portfolio with Data
Analysis of Glycosylated Proteins on the Bioanalyzer
Maintenance and Troubleshooting
2100 Bioanalyzer Support Tool Box - Download here
2100 Bioanalyzer : How To Video - Priming Station Maintenance
2100 Bioanalyzer : How to Video - Prepare a Chip
2100 Bioanalyzer : How To Video - Exchanging Cartridges
2100 Bioanalyzer: How To Video - Electrode Cartridge Maintenance
CGH + (SNP) Microarray Analysis Platform
General
Oligonucleotide aCGH for gDNA Analysis - Enzymatic Labeling For Blood, Cells, or Tissues (with a High Throughput option - User Manual
Oligonucleotide Array-Based CGH for Single Cell Analysis - Enzymatic Labeling Protocol - User Manual
Oligonucleotide aCGH for Genomic DNA Analysis - ULS Labeling - User Manual
Oligonucleotide Array-Based CGH for Genomics DNA Analysis- Bravo Automated Liquid Handling Platform with Enzymatic and ULS - User Manual
Technical and Application Notes
Agilent CGH+SNP Microarrays Demonstrate Superior Copy Number Calling for Cytogenetic Profiling of Hematological Cancer Samples
High-Performance Aberration Detection from Low DNA Input and Mosaic Samples with the Agilent SureTag Labeling Kit and CGH Microarrays
Genomic DNA ScreenTape Data Sheet
D5000 ScreenTape and High Sensitivity D5000 ScreenTape Assays Data Sheet
Performance of the D5000 and High Sensitivity D5000 ScreenTape Assays on 4200 TapeStation System
Agilent D1000 ScreenTape and High Sensitivity D1000 ScreenTape Data Sheet
Performance of the D1000 and High Sensitivity D1000 ScreenTape Assays on 4200 TapeStation System
Sample QC during Agilent SureSelectQXT WGS library preparation
Sample QC using Bioanalyzer and TapeStation for NGS Solutions.
QC of Magnis SureSelect Workflow using Agilent Automated Electrophoresis Platforms
Performance Characteristics of Cell-free DNA ScreenTape Assay
Sample QC with Cell-free DNA ScreenTape Assay
Comparison of DNA Assays Using the 4200 TapeStation System and 2100 Bioanalyzer System
RNA
RNA Quality Control on Tapestation systems
Performance of the RNA ScreenTape Assays on the 4200 TapeStation System
DV200 Evaluation with RNA ScreenTape Assays
Maintenance and Troubleshooting
4200 TapeStation Troubleshooting (starting page 153)
4200 TapeStation Troubleshooting Software (starting page 155)
4200 TapeStation Troubleshooting DNA Applications (starting page 162)
4200 TapeStation Troubleshooting RNA Applications (starting page 183)
4200 TapeStation Troubleshooting Instrument Communication (starting page 196)
Running Hardware Diagnostics and Collecting Troubleshooting Information (starting page 205)
4200 TapeStation Good Measurement Practices (starting page 81)
Cleaning the Instrument (starting page 136)
Engage the Transportation Lock (starting page 139)
Assembling Nest covers steps (starting page 145) and also listed in Agilent Information Center (AIC) (Start Menu>Agilent TapeStation Software>AIC)
Check correct Insertion of lower nest cover (page 152) and animation in Agilent Information Center (AIC) (Start Menu>Agilent TapeStation Software>AIC)
Microarray Gene Expression Portfolion
General
4150 TapeStation Site-Preparation Checklist
4150 Software 3.2 - Download here
4150 Software ReadMe file - Installation and PC Requirements
LIMS Integration of the 4150 TapeStation System
4150 TapeStation Consumables and Reagents
Kit Guides
DNA
HSD1000 ScreenTape assay guide
HSD5000 ScreenTape assay guide
Genomic DNA ScreenTape assay guide
Cell-free DNA ScreenTape assay guide
RNA
Technical and Application Notes
DNA
Performance of the D5000 and High Sensitivity D5000 ScreenTape Assays on 4150 TapeStation System
Performance of the D1000 and High Sensitivity D1000 ScreenTape Assays on 4150 TapeStation System
Performance of the Genomic DNA ScreenTape Assay on 4150 TapeStation System
QC of Magnis Sureselect Workflow using Agilent Automated Electrophoresis Platforms
Sample QC using Bioanalyzer and TapeStation for NGS Solutions.
NGS library QC using 4150 TapeStation and 2100 Bioanalyzer at different steps
Performance Characteristics of Cell-free DNA ScreenTape Assay
Sample QC with Cell-free DNA ScreenTape Assay
RNA
RNA Quality Control on Tapestation systems
Performance of the RNA and High Sensitivity RNA ScreenTape Assays on 4150 TapeStation System
DV200 Evaluation with RNA ScreenTape Assays
Maintenance and Troubleshooting
4150 TapeStation Troubleshooting Software (starting page 169)
4150 TapeStation Troubleshooting DNA Applications (starting page 180)
4150 TapeStation Troubleshooting RNA Applications (starting page 202)
4150 TapeStation Troubleshooting Instrument Communication (starting page 215)
Running Hardware Diagnostics on 4150 TapeStation (starting page 115)
Collecting 4150 TapeStation Troubleshooting Information (starting page 224)
4150 TapeStation Good Measurement Practices (starting page 81)
4150 TapeStation Maintenance Details (starting page 125)
Cleaning the Instrument (starting page 148)
Engage the Transportation Lock (starting page 149)
Assembling and Inserting Nest Covers steps (starting page 158) and also listed in Agilent Information Center (AIC) (Start Menu>Agilent TapeStation Software>AIC
Check Correct Insertion of Lower Nest Cover (page 165) and animation in Agilent Information Center (AIC) (Start Menu>Agilent TapeStation Software>AIC)
Microarry miRNA Portfolio
General
2200 TapeStation Software A.02.02 SR1 - Download here
2200 Software ReadMe file - Installation and PC Requirements
Kit Guides
DNA
HSD1000 ScreenTape assay guide
HSD5000 ScreenTape assay guide
Genomic DNA ScreenTape assay guide
Cell-free DNA ScreenTape assay is NOT available for 2200 Tapestation
RNA
Technical and Application Notes
DNA
Performance of the D1000 and High Sensitivity D1000 ScreenTape Assays on 2200 TapeStation System
Analysis of genomic DNA on 2200 Tapestation
RNA
Performance of the RNA ScreenTape Assays on the 2200 TapeStation System
DV200 Evaluation with RNA ScreenTape Assays
Maintenance and Troubleshooting
2200 TapeStation Troubleshooting Manual
2200 TapeStation Troubleshooting Instrument Communication (starting page 23)
2200 TapeStation Troubleshooting DNA Applications (starting page 39)
2200 TapeStation Troubleshooting RNA Applications (starting page 67)
2200 TapeStation Troubleshooting Error Messages (starting page 93)
Collecting 2200 TapeStation Troubleshooting Information (starting page 34)
2200 TapeStation Good Measurement Practices
2200 TapeStation Essential Measurement Practices (starting page 5)
2200 TapeStation Maintenance Details (starting page 85)