Are you asking about acquisition or processing methods? Processing methods should transfer as long as the software version is the same or newer on the system you are transferring to. Acquisition methods will transfer under the same version conditions but will need to be checked and saved in the new system. This is to accommodate changes in the hardware configuration, drivers, and possibly firmware versions of the instruments.
It depends on the system and where the files are stored. If this is 2 file-based workstations, you can just copy the files in windows file explorer between systems. If you are talking about 2 client server or workstation plus systems, you will need to use the web client to download and upload the files. Once you download the file from the web interface to a local drive on the first system you can then move it locally to a computer with access to upload it into the second system.
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