When you export the results from MFE, the csv file will give you the top hit. Is there a way to download all other possibilities other than the top hit into the CSV file or some other. please see attached. Thanks.
With Qual B.07 - you can only "Export" the alternative hits from the "Compound Identification Results" table - which only displays the results of one compound at a time. So you can go compound by compound, right-clicking on the ID table and exporting each one to a CSV.
However - instead of doing that one compound at a time, you can generate an Excel report (not a CSV export) which includes alternative hits for all compounds. It has the content you want - but won't be in CSV format.
Thank you very much for the reply. Nearly there to solving this issue. However, when exporting to excel, some compounds are showing alternate names while some are missing although they are present in the qual analysis data which is bit strange. Could you please let me know on this? Thanks
You need to expand all the rows in the compound list first. Once the table is expanded - the Excel output will be fully populated.
Were you able to get all the necessary information in the Excel output with hexatriene's suggestions?
hexatriene's suggestion partially solved the problem. For example in MFE if there are 1000 features with potential compound names assigned, i have expanded all as suggested and tried to export to excel but it showed results for atleast top 100 and the rest were not considered by excel to expand the remaining rows.
so i started expanding approx 100 and it worked but it is time taking if you consider to do it on more files. Thanks.
Retrieving data ...