I am trying to permentaly merge two peaks in a processing method? I am able to merge two peaks, but once I run a new sample I have to merge them again.
Would you mind providing us with the revision of EZChrom that you are using? You can determine this by going to Help>About.
How are you merging the two peaks? Are you creating a peak group or are you updating the integration events in your method so that they are integrated as one peak?