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The best solution for you would be to acquire the GC oven temperature as a second signal in your data file. This can be set up in the Signals section of your GC method:
You will then be able to extract this signal into Qual by going to to Chromatograms>Extract Chromatograms and then selecting the Type as Other Chromatograms and choosing the Oven Temperature signal.
This will allow you to correlate the retention time of any given peak with the actual oven temperature at that time.
Thank you for the detailed explanation!