Here is a "best of" collection of links to manuals and tools for LC/MS on Agilent.com, for other instruments refer to Collection of Support Documents on Agilent.com.
Collection of LC (HPLC)/MS Resources
Table of Contents
LC/MS Hardware Troubleshooting & Maintenance
General
RapidFire High-throughput MS System Troubleshooting Guide
All Ions MS/MS Workflow Overview
A Comparison of Several LC/MS Techniques for Use in Toxicology
Single Quad
Agilent 6100 Single Quad LC/MS Quick Start Guide
6100 Series Quadrupole LC/MS Systems Familiarization Guide
Tof/Q-Tof
6000 Series LC/MS System Maintenance Guide
6200 Series TOF and 6500 Series Q-TOF LC/MS System Concepts Guide B.06.01
6200 Series TOF and 6500 Series Q-TOF LC/MS System Quick Start Guide B.08.00
G6500 Series LCMS QTOF Site Preparation Checklist
G6230B Site Preparation Checklist
Triple Quad
6400 Series Triple Quadrupole LC/MS System Concepts Guide B.08.00
6400 Series Triple Quadrupole LC/MS System Quick Start Guide B.08.00
6400 LCMS Site Preparation Checklist
Ion Trap
Quick Start Guide - 500 Ion Trap LC/MS with the Agilent 1200 Infinity Series
Data sheet - 500 Ion Trap LC/MS
Concepts Guide - 6300 Ion Trap LC/MS Systems
Quick Start Guide - 6300 Ion Trap LC/MS Systems Quick Start Guide
Analysis of Surfactants Using the Agilent 500 Ion Trap LC/MS
Software
G2725CA MassHunter Walkup System Quick Start Guide C.02.01
MassHunter Workstation - Data Acquisition for 6200 and 6500 Familiarization Guide B.07.00
LC Catalogs and Parts Finder
Agilent Collection of Columns, Supplies, and Standards Resources
InfinityLab LC Supplies catalog
Agilent Vial Selector / Finder
Agilent Filter Selector / Finder
Videos
MassHunter Software Overview: A Faster Route to Insight
How It Works Video - 6400 Series Triple Quadrupole LC/MS Systems
6470 Triple Quadrupole LC/MS Overview Video
How it works – Agilent 6495 Triple Quadrupole LC/MS
Analysis of Pharmaceuticals by LC/QQQ
Overview of Agilent Metabolomics Solutions
Triggered MRM for Analysis of Pesticides in Complex Food Matrices
http://www.agilent.com/en/video/foodsafety-furstHow it works: Agilent 6560 Ion Mobility Q-TOF
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